I have it set up so I take from my WP first, not my AP. And I listen to my body - if I'm hungry, I eat - I don't have a set equation - When my run is in the morning, I just eat a "normal" breakfast and then have a slightly larger lunch and dinner afterwards.
It also depends on making sure that you're properly fueled and hydrated before and after your run. Tikanique is right - it's not so much how many points you are using, but what you're using those points for. Before/After a long run I make sure I have protein and carbs - usually in the form of egg whites and a bagel - and during I have one of my little electrolyte packets (Gu, if you've heard of it - it's gross, but it will be your friend). Also, you need lots and lots of water. Once your body gets used to running, you won't feel so famished afterwards.
And don't worry about starvation mode - it's kind of a myth. There's a really interesting article posted somewhere on here (I think WL and Current Events) that discusses how there really isn't a starvation mode - its more about your BMR adjusting to the calories you consume, etc.
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