I agree with everyone else, count it with your calories since you woke up. BUT it wouldn't matter. If you had 700 calories one day and 1700 the next, it's the same as 1200 each day, (pulling numbers out of the air here.) Don't stress it.
First mini-goal: 5% - 209 - Met 04/29/11
Second mini-goal: 10% - 198 - Met 6/27/11
Third mini-goal: 15% - 187