I get sore hips from jogging sometimes, I think it's my hip flexors? Stretching everything out usually helps me though. Are you warming up & cooling down each time? Stretching on your rest days could help too, so your muscles don't get stiff like mine do sometimes. I try to use my foam roller on days I don't work out or walk/jog, at least, & it helps.
I'm not much help, but I'm sure someone who knows more about this stuff than I do will be along soon.