Down towards the very end of the Alan Aragon article, he says that, "The big picture solution is in managing total caloric balance with a predominance of minimally processed foods and sufficient physical activity." In my opinion this is 100% correct. If you don't like to read all the science, non-science and everything else in between, this one statement says it all. Eat a reasonable amount of real food, and get out from behind the computer screen [message to self].
Two interesting articles, great discussion!!